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1Department of Biological Sciences, Weill Cornell Medical College and Hunter College, USA
2Department of Biological Sciences, Hunter College, USA
3Department of Physiology and Biophysics, Cornell University, USA
*Corresponding author: Konstantinos Krampis, Department of Physiology and Biophysics, Institute for Computational Biomedicine, Weill Cornell Medical College, Cornell University, New York, USA
Submission: April 19, 2018; Published: May 10, 2018
ISSN 2640-9275 Volume1 Issue2
In this study we present a novel bioinformatics software for the analysis of bioavailability of short amino acid peptides, in various proteins found across four phylogenetic kingdoms of Archaea, Bacteria, Mammals and Plants. In order to assess bioavailability of these peptides, we have used a set of large-scale protein databases from the National Center for Biotechnology Information, and the Basic Local Alignment Search Tools (BLAST+) search program. In our results we present the counts of peptides matches across the phylogenetic kingdoms, and also in further detail for Gram positive or negative bacteria. Our bioinformatics software is written in Python and is made available within this publication as freely available for academic and non-profit use.
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